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Systems Biology and Biotechnology Specialization

Expertise for Professionals and Students in Biotechnology and Biomedical Data Sciences

Earn a Certificate

  • Specialization via Coursera and Icahn School of Medicine at Mount Sinai
  • $294 for 8-10 months
  • 6-8 hours a week of effort
  • 5 courses + capstone project
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Title
Systems Biology and Biotechnology
Rating
☆☆☆☆☆ (0 Reviews)
Overview
Learn methodologies in systems biology including: bioinformatics, dynamical modeling, genomics, network and statistical modeling, proteomics, omics technologies single cell research technologies.
Credential Type
Provider
Cost
$294
Effort
6-8 hours a week
Duration
8-10 months

The Systems Biology and Biotechnology Specialization covers the concepts and methodologies used in systems-level analysis of biomedical systems. Successful participants will learn how to use experimental, computational and mathematical methods in systems biology and how to design practical systems-level frameworks to address questions in a variety of biomedical fields. In the final Capstone Project, students will apply the methods they learned in five courses of specialization to work on a research project.

Incentives & Benefits

When you complete this Specialization, you will be able to utilize cutting-edge computational and experimental methodologies used in systems biology to solve problems in biotechnology and biomedical sciences. The experimental, computational and mathematical methods covered in these courses are essential for converting big data sets into knowledge in biomedical sciences.

What You'll Learn

  • Learn concepts and methodologies used in systems-level analysis of biomedical systems.
  • Learn how to use and integrate experimental, computational and mathematical methods in systems biology.
  • Learn how to design practical systems-level frameworks to address questions in biotechnology, drug discovery and public health.
  • Learn Omics technologies and other state-of-the-art experimental methods in of biomedical sciences and systems biology.

Recommended Background

    ★★★★☆ (5) 10 weeks 16th Oct, 2017
    This course will introduce the student to contemporary Systems Biology focused on mammalian cells, their constituents and their functions. Biology is moving from molecular to modular. As our knowledge of our genome and gene expression deepens and we develop lists of molecules (proteins, lipids, ions) involved in cellular processes, we need to understand how these molecules interact with each other to form modules that act as discrete functional systems. These systems underlie core subcellular processes such as signal transduction, transcription, motility and electrical excitability. In turn these processes come together to exhibit cellular behaviors such as secretion, proliferation and action potentials. What are the properties of such subcellular and cellular systems? What are the mechanisms by which emergent behaviors of systems arise? What types of experiments inform systems-level thinking? Why do we need computation and simulations to understand these systems? The course will develop multiple lines of reasoning to answer the questions listed above. Two major reasoning threads are: the design, execution and interpretation of multivariable experiments that produce large data sets; quantitative reasoning, models and simulations. Examples will be discussed to demonstrate “how” cell- level functions arise and “why” mechanistic knowledge allows us to predict cellular behaviors leading to disease states and drug responses.
    ☆☆☆☆☆ (0) 8 weeks 30th Oct, 2017
    Learn about the technologies underlying experimentation used in systems biology, with particular focus on RNA sequencing, mass spec-based proteomics, flow/mass cytometry and live-cell imaging. A key driver of the systems biology field is the technology allowing us to delve deeper and wider into how cells respond to experimental perturbations. This in turns allows us to build more detailed quantitative models of cellular function, which can give important insight into applications ranging from biotechnology to human disease. This course gives a broad overview of a variety of current experimental techniques used in modern systems biology, with focus on obtaining the quantitative data needed for computational modeling purposes in downstream analyses. We dive deeply into four technologies in particular, mRNA sequencing, mass spectrometry-based proteomics, flow/mass cytometry, and live-cell imaging. These techniques are often used in systems biology and range from genome-wide coverage to single molecule coverage, millions of cells to single cells, and single time points to frequently sampled time courses. We present not only the theoretical background upon which these technologies work, but also enter real wet lab environments to provide instruction on how these techniques are performed in practice, and how resultant data are analyzed for quality and content.
    ★★★★☆ (1) 10 weeks 9th Oct, 2017
    An introduction to data integration and statistical methods used in contemporary Systems Biology, Bioinformatics and Systems Pharmacology research. The course covers methods to process raw data from genome-wide mRNA expression studies (microarrays and RNA-seq) including data normalization, differential expression, clustering, enrichment analysis and network construction. The course contains practical tutorials for using tools and setting up pipelines, but it also covers the mathematics behind the methods applied within the tools. The course is mostly appropriate for beginning graduate students and advanced undergraduates majoring in fields such as biology, math, physics, chemistry, computer science, biomedical and electrical engineering. The course should be useful for researchers who encounter large datasets in their own research. The course presents software tools developed by the Ma’ayan Laboratory (http://icahn.mssm.edu/research/labs/maayan-laboratory) from the Icahn School of Medicine at Mount Sinai, but also other freely available data analysis and visualization tools. The ultimate aim of the course is to enable participants to utilize the methods presented in this course for analyzing their own data for their own projects. For those participants that do not work in the field, the course introduces the current research challenges faced in the field of computational systems biology.
    ★★★★☆ (4) 7 weeks 16th Oct, 2017
    An introduction to dynamical modeling techniques used in contemporary Systems Biology research. We take a case-based approach to teach contemporary mathematical modeling techniques. The course is appropriate for advanced undergraduates and beginning graduate students. Lectures provide biological background and describe the development of both classical mathematical models and more recent representations of biological processes. The course will be useful for students who plan to use experimental techniques as their approach in the laboratory and employ computational modeling as a tool to draw deeper understanding of experiments. The course should also be valuable as an introductory overview for students planning to conduct original research in modeling biological systems. This course focuses on dynamical modeling techniques used in Systems Biology research. These techniques are based on biological mechanisms, and simulations with these models generate predictions that can subsequently be tested experimentally. These testable predictions frequently provide novel insight into biological processes. The approaches taught here can be grouped into the following categories: 1) ordinary differential equation-based models, 2) partial differential equation-based models, and 3) stochastic models.
    ★★★★★ (1) 4 weeks 16th Oct, 2017
    This course will focus on developing integrative skills through directed reading and analysis of the current primary literature to enable the student to develop the capstone project as the overall final exam for the specialization in systems biology.
    ☆☆☆☆☆ (0) 5 weeks 22nd Jun, 2015
    The Capstone project will allow you to conduct an original research project that builds on a published research article. We will provide three potential projects and you will choose one. There will be projects focused on network building and analyses, dynamical models and statistical modeling to identify genomic signatures.
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