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Biology Meets Programming: Bioinformatics for Beginners

University of California, San Diego via Coursera

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Overview

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The sequencing of the human genome at the start of this century fueled a computational revolution in biology. As a result, modern biology produces as many new algorithms as any other fundamental realm of science.

Once we have sequenced a genome, it may look like an incomprehensible string of the nucleotides A, C, G, and T. Yet hidden in these four letters is a secret language. In this course, we will start understanding this language by using computer programming. What makes this course distinct is that we assume that you have never programmed before.

While learning Python from the ground up, we will write algorithms to determine where a bacterium starts replicating its genome, a problem with applications in genetic engineering.  We will also use programming to learn how a cell knows what time of day it is and how the bacterium causing tuberculosis can hide from antibiotics.

This course offers a much gentler-paced alternative to Finding Hidden Messages in DNA, the first course in the Bioinformatics Specialization.  After completing it, we hope you will be well prepared to jump into the full Specialization!

Syllabus

The course will be based around the following biological questions, with the algorithmic ideas that we will use to solve them in parentheses:
  • Where Does DNA Replication Begin? (Algorithmic Warm-up)
  • Which DNA Patterns Act As Molecular Clocks? (Greedy and Randomized Algorithms)
Some of these topics will require you to complete coding challenges in order to implement bioinformatics algorithms, followed by a comprehension quiz at the end of the topic.  Other topics will carry lighter workloads and consist primarily of lecture videos and short quizzes.

Taught by

Pavel Pevzner and Phillip Compeau

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Reviews for Coursera's Biology Meets Programming: Bioinformatics for Beginners
3.3 Based on 3 reviews

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Heavenly F
4.0 a year ago
by Heavenly dropped this course, spending 5 hours a week on it and found the course difficulty to be medium.
I took this course because I was very interested in the subject and had taken a few crash courses prior. At first glance, I believed it would be a simple course. do reading/videos, complete quizzes, and move on. However, it wasn't and was quite different. The course did not have any work in the actually coursera course but rather in a whole new website. With this website you have to sign up, confirm an email, and then move on which can be a hassle for people like me. After you are done with this sign up process, you then had to read the material. That's great as I love reading the material and…
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Anastasia B
5.0 2 years ago
by Anastasia completed this course.
1 person found
this review helpful
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Anonymous
1.0 3 years ago
Anonymous dropped this course.
Has had the start date put back in June and now back again from August until November. I doubt this course will ever happen...
3 people found
this review helpful
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