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Classroom Contents
Integrate Single-Cell RNA-Seq Datasets in R Using Seurat - Detailed Seurat Workflow Tutorial
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- 1 Intro
- 2 Study design
- 3 When to integrate?
- 4 Types of integration
- 5 Batch correction methods
- 6 Downloading data
- 7 Read data in R
- 8 Merge Seurat objects
- 9 QC and filtering
- 10 Do we see batch effects in our data?
- 11 Visualize merged data before integration
- 12 Integration steps
- 13 Visualize integrated data after integration
- 14 Comparing UMAPs: before integration vs after integration
