This course on Bacterial Genomics aims to teach learners how to analyze bacterial genomes through genome comparison, assembly, annotation, and phylogenetic tree construction. Participants will acquire skills in using bioinformatics tools such as BRIG, Prokka, SPAdes, MUSCLE, PHYML, ISFinder, CGView, Artemis, Abricate, RAxML, iTOL, and Snippy. The teaching method involves hands-on tutorials and practical sessions. This course is designed for beginners in bioinformatics who are interested in studying bacterial genomics and conducting genomic analysis.
Overview
Syllabus
A bioinformatics tutorial on Genome comparison using BRIG software.
Bioinformatics for beginners | Course | Genome Assembly and Annotation | Bacterial Genomes | Prokka.
A bioinformatics tutorial on Bacterial Genome Analysis | Comparative Genomics.
Bioinformatics for beginners | Course | Genome Assembly and Annotation | llumina Reads | SPAdes.
A bioinformatics tutorial on GENOME ASSEMBLY | COMBINING NANOPORE AND ILLUMINA READS.
Bioinformatics for beginners | Course | Genome Assembly and annotation using PGAP | Tutorial.
Create phylogenetic trees using MUSCLE and PHYML.
Bioinformatics for Beginners| HOW TO IDENTIFY INSERTION SEQUENCE ELEMENTS IN GENOMES | ISFINDER.
Bioinformatics for Beginners | Course | Genome visualization using the online CGView tool.
Genome Visualization using Artemis (DNAPlotter) | Bioinformatics for Beginners | Course | Tutorial.
Hands-on bioinformatics tutorial on Pangenome analysis of bacterial genomes | Beginners Course.
A bioinformatics tutorial on how to identify Antimicrobial Resistance Genes | Abricate | Beginners.
A bioinformatics tutorial on how to Identify Virulence Factors in Genomes using Abricate | Beginners.
Build Phylogenetic Trees based on Gene Sequences.
How to Build Phylogenetic Trees using RAxML and iTOL | Bioinformatics for Beginners |Tutorial.
Visualize phylogenetic trees using iTOL.
A bioinformatics tutorial on genome annotation of bacterial genomes using PROKKA (updated video).
Genome Assembly Tutorial | ONT reads | FLYE | Bioinformatics for Beginners.
Identify Antimicrobial resistance genes in multiple input samples.
Variant Calling using Snippy | Microbial Bioinformatics | Bioinformatics for Beginners | Course.
Taught by
Bioinformatics Coach
